fix

ksahlin · Dec 23, 2019 · ba2a19b · ba2a19b
1 parent 5b45ff6
commit ba2a19b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/evaluation_sim/Snakefile b/evaluation_sim/Snakefile
@@ -123,7 +123,7 @@ rule isoncorrect:
         outfolder = config["ROOT_OUT"] + "/correction/{0}/{1}/{2}/".format(wildcards.dataset, wildcards.nr_reads, wildcards.abundance)   
         isoncorrect_dir = config["ROOT_IN"]
         time_and_mem = config["ROOT_OUT"] + "/time_and_mem/{0}/{1}/{2}/correction_time_and_mem.txt".format(wildcards.dataset, wildcards.nr_reads, wildcards.abundance)
-        shell("{time} python {isoncorrect_dir}/run_isoncorrect  --fastq_folder {infolder}  --outfolder {outfolder} --set_w_dynamically --t 20 --keep_old 2>&1 | tee {time_and_mem}")
+        shell("{time} python {isoncorrect_dir}/run_isoncorrect  --fastq_folder {infolder}  --outfolder {outfolder} --set_w_dynamically --t 60 --keep_old 2>&1 | tee {time_and_mem}")
         shell("touch {output.flag}")