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--output_folder prepends working directory path onto paths from root #29

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tintori opened this issue Apr 21, 2021 · 1 comment
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@tintori
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tintori commented Apr 21, 2021

Here's a little one I noticed—If I try to specify a path from the root for the --output_folder, my working directory path is automatically pasted onto the beginning of it.

For example, if I'm in the working directory "/path/to/" and run pixy with the option "--output_folder /path/to/my/directory/", the output file gets written to "/path/to//path/to/my/directory/".

It doesn't seem to be happening with the other flags (--vcf and --populations are all fine when I specify a path from root).

Thanks for the great tool and excellent documentation!

@tintori tintori added the bug Something isn't working label Apr 21, 2021
@ksamuk
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ksamuk commented May 11, 2021

Thanks for catching this! This has been fixed in the new version (1.1.0.beta1) on conda-forge.

@ksamuk ksamuk closed this as completed May 11, 2021
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