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23 Open 91 Closed
23 Open 91 Closed
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Issues list

Code crashes when chromosome ID's are digit-only bug Something isn't working
#120 opened Oct 31, 2024 by jmoellmann
Should sites with no depth coverage by included or excluded from VCF files while using Whole genome data for Dxy calculation? help wanted Extra attention is needed
#119 opened Oct 25, 2024 by vincianem
avg_pi was bigger than that of vcftools help wanted Extra attention is needed
#118 opened Sep 9, 2024 by feiyu007
About --chromosomes option
#116 opened Aug 22, 2024 by ChenJuiYANG
can index big vcf enhancement New feature or request
#115 opened Aug 15, 2024 by WWz33
All avg_dxy in pixy_dxy.txt is NA help wanted Extra attention is needed
#114 opened Jul 19, 2024 by ala98412
3
version 1.2.11.beta1., pixy: error: unrecognized arguments: --variant_filter_expression DP -invariant_filter_expression DP help wanted Extra attention is needed
#113 opened Jul 13, 2024 by AliBasuony2022
Calculate Missing data per window enhancement New feature or request
#109 opened Jun 13, 2024 by burbrink
File corrupted help wanted Extra attention is needed
#108 opened May 18, 2024 by WeixuanPlant
1
< enhancement New feature or request
#107 opened Apr 22, 2024 by Jesuscs049
invariant vcf with ALT "*" instead of "." help wanted Extra attention is needed
#105 opened Apr 19, 2024 by macurqcron
4
0 count of count_diffs and count_comparisons and all in count_missing help wanted Extra attention is needed
#104 opened Apr 17, 2024 by hrluo93
11
issues about multiple alleles and phasing sites help wanted Extra attention is needed
#102 opened Apr 7, 2024 by zy66-su
Are these filter out sites not used in the calculation? help wanted Extra attention is needed
#101 opened Mar 28, 2024 by jiangzy26
1
Using pixy without an all sites VCF? help wanted Extra attention is needed
#100 opened Mar 18, 2024 by milesandersonmn
1
pixy doesnt handle masked haplotype data? bug Something isn't working
#99 opened Mar 4, 2024 by jamesfifer
Add support for arbitrary ploidy level (at least warn about incompatibility with polyploids) enhancement New feature or request high priority
#97 opened Jan 24, 2024 by taprs
1
Provide convenient sample data in a package, such as sample data CHrX in sample scripts enhancement New feature or request todo This issue will be addressed in a future update
#85 opened Aug 17, 2023 by tongtongy666
ability to handle sex chromosomes enhancement New feature or request high priority todo This issue will be addressed in a future update
#79 opened May 10, 2023 by jtweir
2
csi index enhancement New feature or request todo This issue will be addressed in a future update
#72 opened Jan 31, 2023 by giuliafrascarelli
3
Better Error Message for .tbi Files in Place of VCFs enhancement New feature or request todo This issue will be addressed in a future update
#63 opened Aug 24, 2022 by ksamuk
Output Fst variance components enhancement New feature or request todo This issue will be addressed in a future update
#54 opened Jan 11, 2022 by SethMusker
Tajima's D enhancement New feature or request todo This issue will be addressed in a future update
#38 opened Jun 18, 2021 by valgartner
4
ProTip! Updated in the last three days: updated:>2024-11-01.