XAE

[ktmeaton]

Parents

Clade: Omicron/BA.2/21L,Omicron/BA.1/21K
Lineage: BA.2*,BA.1.1*
Lineage Confidence: 1.0,0.88

Alleles

Breakpoints

Breakpoint 1: 24504:26059

Tasks

• resources/breakpoints.tsv Updated

[ktmeaton]

I don't understand it yet, but nextclade keeps reporting the following as labeled private mutations:

• G21987A | 98% | 21J,21L,22C,22B,21I,21A,22A,21B,22D
• C25000T | 98% | 21K,21L,22C,22B,22A,21M,22D
• A26530G | 100% | 21K

Which doesn't seem right since the parents are 21L and 21K (24504:26059). Why would these be considered private mutations? Shouldn't they be part of the clade definition?

[ktmeaton]

Nextclade dataset 2022-09-07

• G21987A is not in branch_attrs.
• C25000T is not in branch_attrs, but T25000C is.
• A26530G is not inbranch_attrs.