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Plot substitutions as ticks on breakpoints figure #57

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ktmeaton opened this issue Aug 3, 2022 · 2 comments
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Plot substitutions as ticks on breakpoints figure #57

ktmeaton opened this issue Aug 3, 2022 · 2 comments
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enhancement New feature or request
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v0.4.0

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ktmeaton commented Aug 3, 2022 •
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This help in interpreting lineages that have been split into multiple clusters (ex. XM)

breakpoints_clade

This help in interpreting lineages with the same breakpoint and parents (but different subs). For example, XQ and XR differ by one sub (around 17500).
breakpoints_lineage
@ktmeaton ktmeaton self-assigned this Aug 3, 2022
@ktmeaton ktmeaton added the enhancement New feature or request label Aug 3, 2022
@ktmeaton ktmeaton added this to the v0.3.1 milestone Aug 3, 2022
ktmeaton pushed a commit that referenced this issue Aug 3, 2022
script: plot subs along with breakpoints for issue #57
6520457
@ktmeaton ktmeaton closed this as completed Aug 3, 2022
@ktmeaton ktmeaton mentioned this issue Aug 5, 2022
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We should included substitutions in breakpoints.

@ktmeaton ktmeaton reopened this Aug 17, 2022
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This was implemented in Issue #180:

breakpoints_clade

ktmeaton pushed a commit that referenced this issue Oct 26, 2022
script: use all substitutions for cov-spectrum for #180 and #57
b44e68e
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enhancement New feature or request
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ncov-recombinant
Status: Done
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v0.4.0
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@ktmeaton