Use --call-summits only when calling narrow peaks. These summits can …

…then be used for TFBS enrichment.
ktrns · Jun 29, 2023 · df64c3a · df64c3a
1 parent dac4367
commit df64c3a
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -620,8 +620,7 @@ process {
             '--nomodel',
             '--shift -75',
             '--extsize 150',
-            '--call-summits',
-            params.narrow_peak      ? '' : "--broad --broad-cutoff ${params.broad_cutoff}",
+            params.narrow_peak      ? '--call-summits' : "--broad --broad-cutoff ${params.broad_cutoff}",
             params.save_macs_pileup ? '--bdg --SPMR' : '',
             params.macs_pvalue      ? "--pvalue ${params.macs_pvalue}" : '',
             params.macs_fdr         ? "--qvalue ${params.macs_fdr}" : ''