Issue with bds

[urjaswita]

Hi, I installed the piepline as suggested in README here without any error, but I get the below error when I just type bds or try to run the pipeline. Do you know how can I fix this? I have installed bds as recommended in the GitHub readme. I am not sure if it's a bds issue or something with our cluster. Thanks in advance for your help.

Exception in thread "main" java.lang.UnsupportedClassVersionError: org/bds/Bds : Unsupported major.minor version 52.0
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:482)

[leepc12]

Can you check your java version with `java -version`? Jin <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=icon> Virus-free. www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=link> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>

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On Wed, Aug 2, 2017 at 12:44 PM, urjaswita ***@***.***> wrote: Hi, I installed the piepline as suggested in README here without any error, but I get the below error when I just type bds or try to run the pipeline. Do you know how can I fix this? I have installed bds as recommended in the GitHub readme. I am not sure if it's a bds issue or something with our cluster. Thanks in advance for your help. Exception in thread "main" java.lang.UnsupportedClassVersionError: org/bds/Bds : Unsupported major.minor version 52.0 at java.lang.ClassLoader.defineClass1(Native Method) at java.lang.ClassLoader.defineClass(ClassLoader.java:800) at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142) at java.net.URLClassLoader.defineClass(URLClassLoader.java:449) at java.net.URLClassLoader.access$100(URLClassLoader.java:71) at java.net.URLClassLoader$1.run(URLClassLoader.java:361) at java.net.URLClassLoader$1.run(URLClassLoader.java:355) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:354) at java.lang.ClassLoader.loadClass(ClassLoader.java:425) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308) at java.lang.ClassLoader.loadClass(ClassLoader.java:358) at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:482) — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#17>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIOd_AkB-8V63bG1-iNMuGJGSFqLKU-6ks5sUNGygaJpZM4OrkMy> .

[urjaswita]

Thanks for your reply Jin! Below is the output of java version command

java version "1.7.0_51"
Java(TM) SE Runtime Environment (build 1.7.0_51-b13)
Java HotSpot(TM) 64-Bit Server VM (build 24.51-b03, mixed mode)

[leepc12]

BDS works with java >= 1.8. Please ask your admin to install it or locally install it on your home directory. https://github.com/kundajelab/atac_dnase_pipelines#java Jin <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=icon> Virus-free. www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=link> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>

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On Wed, Aug 2, 2017 at 1:31 PM, urjaswita ***@***.***> wrote: Thanks for your reply Jin! Below is the output of java version command java version "1.7.0_51" Java(TM) SE Runtime Environment (build 1.7.0_51-b13) Java HotSpot(TM) 64-Bit Server VM (build 24.51-b03, mixed mode) — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#17 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIOd_LcrFzh6jEObtEJYTWlwg2ZlZiYpks5sUNy4gaJpZM4OrkMy> .

[urjaswita]

The latest Java version worked. Thank you Jin!