Merge pull request #57 from kundajelab/cluster_init

Support for MEME-based initialization
kundajelab · Apr 22, 2020 · 1bfc63a · 1bfc63a
2 parents 682faf6 + e1db274
commit 1bfc63a
Show file tree

Hide file tree

Showing 20 changed files with 6,588 additions and 2,683 deletions.
diff --git a/examples/H1ESC_Nanog_gkmsvm/.gitignore b/examples/H1ESC_Nanog_gkmsvm/.gitignore
@@ -2,3 +2,4 @@
 **/*.txt
 **/*.fa
 lsgkm
+meme_out
diff --git a/examples/H1ESC_Nanog_gkmsvm/JustExtractSeqletsNanog.ipynb b/examples/H1ESC_Nanog_gkmsvm/JustExtractSeqletsNanog.ipynb
diff --git a/examples/H1ESC_Nanog_gkmsvm/Nanog_GkmExplain_Generate_Data.ipynb b/examples/H1ESC_Nanog_gkmsvm/Nanog_GkmExplain_Generate_Data.ipynb
diff --git a/examples/H1ESC_Nanog_gkmsvm/TF MoDISco Nanog.ipynb b/examples/H1ESC_Nanog_gkmsvm/TF MoDISco Nanog.ipynb