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Lower Mem AGKM + Variable Len Seqlet ID + Initial Exemplar-Based Hit Scoring

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@AvantiShri AvantiShri released this 20 Jan 22:16
· 131 commits to master since this release
150f4a4

Corresponds to PR #78

  • AGKM embeddings are now the default (also avoids importing tensorflow unless user wants to use the previous gapped kmer embeddings)
  • cap on the agkm embeddings size; reduces memory use
  • Implementation of variable-length seqlet identification
  • Initial implementation of exemplar-based hit-scoring