Trying to fix conda environment building #25
Workflow file for this run
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| name: Automatic GUI build | |
| on: | |
| workflow_dispatch: | |
| push: | |
| tags: | |
| - 'rel-*' | |
| - 'gui-test-*' | |
| jobs: | |
| build-windows: | |
| name: Executable build for Windows | |
| runs-on: windows-latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Make temporary folder for UPX | |
| run: | | |
| mkdir .\UPX\ | |
| - name: Download UPX zip | |
| run: | | |
| Invoke-WebRequest -uri "https://github.com/upx/upx/releases/download/v3.96/upx-3.96-win64.zip" -outfile ".\UPX\upx-3.96-win64.zip" | |
| - name: Unpack UPX | |
| run: | | |
| Add-Type -AssemblyName System.IO.Compression.FileSystem | |
| function Unzip | |
| { | |
| param([string]$zipfile, [string]$outpath) | |
| [System.IO.Compression.ZipFile]::ExtractToDirectory($zipfile, $outpath) | |
| } | |
| Unzip ".\UPX\upx-3.96-win64.zip" ".\UPX\upx-3.96\" | |
| - name: Create conda environment | |
| run: | | |
| C:\Miniconda\condabin\conda.bat create -n picked_group_fdr_gui python=3.9 | |
| C:\Miniconda\condabin\conda.bat init powershell | |
| C:\Miniconda\condabin\conda.bat activate picked_group_fdr_gui | |
| C:\Miniconda\condabin\conda.bat install -c conda-forge nomkl | |
| C:\Miniconda\condabin\conda.bat install -c conda-forge numpy scipy pandas networkx pyqt pyinstaller bottleneck toml threadpoolctl | |
| C:\Miniconda\condabin\conda.bat install -c bioconda mokapot triqler | |
| cd .\gui_tools\ | |
| & .\build_gui.bat | |
| cd .. | |
| - name: Add built .exe to release | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: gui_tools/dist/*.zip | |
| tag: ${{ github.ref }} | |
| overwrite: false | |
| file_glob: true |