Ready for v0.7.0

kusterlab · May 2, 2024 · 1fdb690 · 1fdb690
1 parent 4dec8e2
commit 1fdb690
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Showing 4 changed files with 17 additions and 2 deletions.
diff --git a/.dockerignore b/.dockerignore
@@ -2,5 +2,8 @@ admin
 build
 data
 dist
+docs
 results
 .*
+matplotlib_mock
+tests
diff --git a/CHANGELOG b/CHANGELOG
@@ -1,3 +1,15 @@
+v0.7.0
+- Less strict llvmlite dependency
+- Add functionality to requantify fragpipe combined_protein.tsv
+- Fix random number seed for mokapot
+- Major refactoring and linting of multiple scripts
+- Add system tests
+- Fix peptide_protein_map input option for quantification.py
+- Refactor picked_group_fdr.py, add some unit tests
+- Add --suppress_missing_peptide_warning to all relevant modules
+- Add readthedocs documentation
+- Allow combining multiple Sage or FragPipe searches
+
 v0.6.6
 - Revert return type to List for ProteinGroups.get_protein_groups
 

diff --git a/docs/release_checklist.md b/docs/release_checklist.md
@@ -1,4 +1,4 @@
-1. test if unit and system tests pass: `make test; make integration_test; make pipeline_test`
+1. test if unit and system tests pass: `make test; make integration_test; make pipeline_test; make system_test`
    test if fragpipe and sage system tests pass: `make fragpipe_test; make sage_test`
 2. check if docker image works: `make build; make all`
 3. update version number: `poetry version <major/minor/patch>`

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "picked_group_fdr"
-version = "0.6.6"
+version = "0.7.0"
 description = "Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments"
 authors = ["Matthew The <matthew.the@tum.de>"]
 license= "Apache-2.0"