Fix update_fragpipe_results

kusterlab · Jan 5, 2024 · 24a22aa · 24a22aa
1 parent 39a5bdc
commit 24a22aa
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/picked_group_fdr/pipeline/update_fragpipe_results.py b/picked_group_fdr/pipeline/update_fragpipe_results.py
@@ -323,7 +323,6 @@ def generate_fragpipe_protein_file(
         protein_group_results,
         protein_groups,
         experiment,
-        experimental_design,
         discard_shared_peptides,
     )
 
@@ -388,7 +387,7 @@ def generate_fragpipe_combined_protein_file(
         protein_groups,
         protein_group_results,
         peptide_to_protein_maps=None,
-        file_list_file=None,
+        experimental_design=None,
         discard_shared_peptides=discard_shared_peptides,
     )
 

diff --git a/picked_group_fdr/quant/fragpipe.py b/picked_group_fdr/quant/fragpipe.py
@@ -51,7 +51,7 @@ def add_precursor_quants(
             continue
 
         if not helpers.is_decoy(proteins):
-            post_err_probs.append((post_err_prob, "", experiment, peptide))
+            post_err_probs.append((post_err_prob, experiment, experiment, peptide))
 
         for protein_group_idx in protein_group_idxs:
             precursor_quant = PrecursorQuant(