C3_sarcopenia_data_descriptor

Repo for code related to Sarcopenia Data Descriptor. For Fuller Lab at MD Anderson Cancer Center. Data descriptor publication is available at https://www.nature.com/articles/s41597-022-01587-w. Corresponding image sets generated from this code are available on Figshare (10.6084/m9.figshare.18480917).

This repo contains the following files:

Jupyter notebook of code implementation (nifti_conversion_github.ipynb). - The notebook utilizes various functions to read in .tag format segmentation files and .dcm format image files (from TCIA) to generate NIfTI files.

Utilized the following Python (version 3.8.8) libraries in project:

DicomRTTool version 0.3.21.
Matplotlib version 3.5.1.
Pandas version 1.1.3.
SimpleITK version 1.2.4.
Pydicom version 2.2.2.