fa-rename

Rename headers/sequence IDs in multi-FASTA file

Author

Jason Kwong (@kwongjc)

Dependencies

• Python 3.x
• BioPython

Usage

usage: 
  fa-rename.py [--ids new_names.txt] FASTA > new.fasta

Rename headers/sequence IDs in multi-FASTA file

positional arguments:
  FASTA       original FASTA file

optional arguments:
  -h, --help  show this help message and exit
  --ids FILE  specify two column tab-separated file with [oldnames] [newnames]
  --out FILE  specify output file (default = stdout)
  --version   show program's version number and exit

Bugs

Please submit via the GitHub issues page.

Software Licence

GPLv3