Next Generation Sequencing fragment manipulation

This is a Python package for easy and efficient manipulation of Next Generation Sequencing reads.

Install

If you dont already have numpy and scipy installed, it is best to download Anaconda, a python distribution that has them included.

    https://continuum.io/downloads

Dependencies can be installed by:

    pip install -r requirements.txt

PyPI install, presuming you have all its requirements installed:

    pip install NGSfragments

Usage

from NGSfragments import fragments
import numpy as np

# Create data
frags = fragments("test_bam.bam", verbose=True)