Notes and scripts for the Great Lakes Models
In the Lake Erie folder
- Restarts: How to create a restart file to set the initial conditions(ICs) to match LEEM ICs.
- run - notes for compiling and running on Expanse at SDSC
- submit.sh - SLURM batch script for Expanse
data
- TP_ZOO_Loads.csv: Phosphorus loading, including Zooplankton component
scripts
- add-tp-river-loads.R: R script to add TP loads to river forcing file
- ncks_clip_forcing.sh: Clip forcing files in order to run FVCOM as 'restart' from March 1
Other Links:
- visit-tp-compare - create images and movies from TP model or TP-(as function of LEEM) model
- shiny-le - Code for R Shiny app
- visit-scripts - general visit scripts, including a script to make images and movies of every LEEM variable
- BIO_TP - the TP bio model for FVCOM
- shiny-le/README.md: Readme has notes to create netCDF with TP derived from LEEM quantities
Other Notes:
- For VisIt, comparing with LEEM:
DefineScalarExpression("TP_tot", "RPOP + LPOP + RDOP + LDOP + PO4T + LPIP + RPIP + (ZOO1 + ZOO2 + ZOO3)/50.0")