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[LAB-635] private ipfs compose #677

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merged 76 commits into from
Oct 4, 2023
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@alabdao alabdao commented Sep 28, 2023

  • Added custom IPFS image
  • add ipfs swarm addresss env set
  • ci testing
  • Local private IPFS node
  • Private IPFS compose
  • remove unattended upgrade package from system
  • backend for private ipfs
  • reordered layer to avoid busting cache
  • Trigger Build
  • removed -v
  • adjusted swarm key permission
  • Updated README

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docs ⬜️ Ignored (Inspect) Visit Preview Oct 4, 2023 1:49pm

@alabdao alabdao temporarily deployed to ci September 28, 2023 15:37 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci September 28, 2023 15:37 — with GitHub Actions Inactive
@alabdao alabdao changed the title ops/LAB 635 private ipfs compose [LAB-635] private ipfs compose Sep 28, 2023
@@ -0,0 +1,28 @@
# This workflow is for plex jobs against locally running environment
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I'll be setting up CI in a separate PR.

@alabdao alabdao temporarily deployed to ci September 28, 2023 16:07 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci September 28, 2023 16:07 — with GitHub Actions Inactive
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Mostly working with the Local Pvt IPFS.

plex git:(ops/LAB-635-private-ipfs-compose) ./plex init -t tools/equibind.json -i '{"protein": ["testdata/binding/abl/7n9g.pdb"], "small_molecule": ["testdata/binding/abl/ZINC000003986735.sdf"]}' --scatteringMethod=dotProduct --autoRun=true
Plex version (v0.10.4) up to date.
Invalid wallet address detected. Using empty string for user ID.
Pinned IO JSON CID: QmPQCXm3ZKtbSwNtCqaqmPEfJeiS8cg2fsFQbnH8ZDvCjj
Created working directory: /Users/mcmenemy/code/plex/jobs/a6af98c6-0cb0-4c5e-8777-17108add5ca7
Initialized IO file at: /Users/mcmenemy/code/plex/jobs/a6af98c6-0cb0-4c5e-8777-17108add5ca7/io.json
Extracting user ID from IO JSON...
Processing IO Entries
Starting to process IO entry 0 
Job running...
Bacalhau job id: ceb7a01d-a361-41a8-8738-bc1472a3d343 
Error processing IO entry 0 
error getting Bacalhau job results: bacalhau errored job; please run `bacalhau describe ceb7a01d-a361-41a8-8738-bc1472a3d343` for more details
Finished processing, results written to /Users/mcmenemy/code/plex/jobs/a6af98c6-0cb0-4c5e-8777-17108add5ca7/io.json
Completed IO JSON CID: Qmdqejug9Wtk8VnP1WEpinpeELQydjanEbAqTkrmLjQxGp

But, keep getting the following error from Bacalhau describe

State:
  CreateTime: "2023-09-28T16:34:56.729974967Z"
  Executions:
  - AcceptedAskForBid: false
    ComputeReference: e-d10c2fe1-d7ff-48c6-95e8-2d28a210396c
    CreateTime: "2023-09-28T16:34:56.749921883Z"
    JobID: ceb7a01d-a361-41a8-8738-bc1472a3d343
    NodeId: QmQ4EJTf5D2nN8E1s5i5gFJA5mhASJKe8cBfLQExFtbmKt
    PublishedResults: {}
    State: AskForBidRejected
    Status: Node does not support any of the published image platforms
    UpdateTime: "2023-09-28T16:34:56.731114717Z"
    VerificationResult: {}
    Version: 2
  JobID: ceb7a01d-a361-41a8-8738-bc1472a3d343
  State: Error
  TimeoutAt: "0001-01-01T00:00:00Z"
  UpdateTime: "2023-09-28T16:34:56.750536883Z"
  Version: 5

I think this may be from how the Bacalhau Job publish settings are configured in code. Are you getting the same error with the local private IPFS?

README.md Outdated
```
docker compose up -d
```

Note: New docker installation include docker compose, older installations required you install docker-compose separately and run `docker-compose up -d`
To run `plex` cli against local environment simple set `BACALHAU_API_HOST=127.0.0.1`
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change simple set to simply set

@alabdao alabdao temporarily deployed to ci September 28, 2023 16:47 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci September 28, 2023 16:47 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci September 28, 2023 17:05 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci September 28, 2023 17:05 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:23 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:23 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:23 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:27 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:27 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:38 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:38 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:38 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:41 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:41 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:41 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:49 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:49 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:49 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:49 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:53 — with GitHub Actions Inactive
@alabdao alabdao temporarily deployed to ci October 4, 2023 13:53 — with GitHub Actions Inactive
@alabdao alabdao merged commit d735d1d into main Oct 4, 2023
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@alabdao alabdao deleted the ops/LAB-635-private-ipfs-compose branch October 4, 2023 14:01
thetechnocrat-dev added a commit that referenced this pull request Oct 4, 2023
Co-authored-by: thetechnocrat-dev <josh.mcmenemy@openzyme.bio>
alabdao added a commit that referenced this pull request Oct 11, 2023
Co-authored-by: thetechnocrat-dev <josh.mcmenemy@openzyme.bio>
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3 participants