update plex job publisher spec for bacalhau v1.1

[acashmoney]

For bacalhau v1.1 migration, we need to ensure PublisherSpec.Type is ipfs instead of estuary, which is deprecated as of v1.1

Steps to Test:

1. export BACALHAU_API_HOST=bacalhau.prod.labdao.xyz
2. Confirm server is v1.1.0 with bacalhau version
3. go run main.go init -t QmZWYpZXsrbtzvBCHngh4YEgME5djnV5EedyTpc8DrK7k2 -i '{"protein": ["QmUWCBTqbRaKkPXQ3M14NkUuM4TEwfhVfrqLNoBB7syyyd/7n9g.pdb"], "small_molecule": ["QmViB4EnKX6PXd77WYSgMDMq9ZMX14peu3ZNoVV1LHUZwS/ZINC000019632618.sdf"]}' --scatteringMethod=dotProduct --autoRun=true -a test
4. Confirm PublisherSpec.Type is ipfs with bacalhau describe <job-id>

Should see a successful run like below.

go run main.go init -t QmZWYpZXsrbtzvBCHngh4YEgME5djnV5EedyTpc8DrK7k2 -i '{"protein": ["QmUWCBTqbRaKkPXQ3M14NkUuM4TEwfhVfrqLNoBB7syyyd/7n9g.pdb"], "small_molecule": ["QmViB4EnKX6PXd77WYSgMDMq9ZMX14peu3ZNoVV1LHUZwS/ZINC000019632618.sdf"]}' --scatteringMethod=dotProduct --autoRun=true -a test
Plex version (v0.10.4) up to date.
Pinned IO JSON CID: QmWhpHj9qWwHETVwCJtK1o5wXvxF8h7oVBxQQKpp4HkDXK
Created working directory: /Users/aakaash/Desktop/code/OPENLAB/plex/jobs/48c0acb6-7a59-4210-a49f-7f91c28e6150
Initialized IO file at: /Users/aakaash/Desktop/code/OPENLAB/plex/jobs/48c0acb6-7a59-4210-a49f-7f91c28e6150/io.json
Extracting user ID from IO JSON...
Processing IO Entries
Starting to process IO entry 0 
Job running...
Bacalhau job id: 891dd10b-d920-4ca7-b741-53bbd3d86afb 
////🌱____////
Computed default go-libp2p Resource Manager limits based on:
    - 'Swarm.ResourceMgr.MaxMemory': "8.6 GB"
    - 'Swarm.ResourceMgr.MaxFileDescriptors': 30720

Theses can be inspected with 'ipfs swarm resources'.

Success processing IO entry 0 
Finished processing, results written to /Users/aakaash/Desktop/code/OPENLAB/plex/jobs/48c0acb6-7a59-4210-a49f-7f91c28e6150/io.json
Completed IO JSON CID: QmQRiwxsMxzcReALZEXC45rELaLdGwaqMviwKTYa4Xnq72

Running bacalhau describe on the job ID...

bacalhau describe 891dd10b-d920-4ca7-b741-53bbd3d86afb
Job:
  APIVersion: V1beta2
  Metadata:
    ClientID: c1cda6a8463a6bd832fa91a04cb2ab3704f7cc5a6761b0ba686781fd5768d114
    CreatedAt: "2023-10-05T16:38:29.150194654Z"
    ID: 891dd10b-d920-4ca7-b741-53bbd3d86afb
    Requester:
      RequesterNodeID: QmZkGQUCERDq8hWv67JkVurLmjXzRFYiMPoueBXb6FJR2P
      RequesterPublicKey: CAASpgIwggEiMA0GCSqGSIb3DQEBAQUAA4IBDwAwggEKAoIBAQDqPOHv26xJPsCrPdslpwv07P5R5pAZLnFYfxcn/02ZoKg/3TfsqOrINGGW5XqFNgp5VZULTrkfQK0bsyPK2jrhw4dA21u4TbKwugRM3jA6kQvz+hj5HL9MT2NUFt2qvoCIXSXyDerLGLsNkD0HJwV75jsrICgP/58vsjJk/3EEggJRQnjznAq7m5dZb9zTCx1Em90Vh19tdSvSLKJFjtlJW/S+VCaj+4biMCsO30c51rsIH3kRDMrbniqLOy7IsGHAUhUgpmPYYELry/Om97hXPJ6FoDAnMUOVpcb1SaABZYp/1gt5h1wwTiE6XUvu+rjS48KSp+2YCCK/1zDIA4QVAgMBAAE=
  Spec:
    Annotations:
    - test
    - userId=0x1df13A64355BE17118a05C00dA9815DAa4ab1ea0
    Deal:
      Concurrency: 1
    Docker: {}
    EngineSpec:
      Params:
        Entrypoint:
        - /bin/bash
        - -c
        - /bin/bash -c "mkdir -p /tmp-inputs/tmp; mkdir -p /tmp-outputs/tmp; cp /inputs/*
          /tmp-inputs/tmp/; ls /tmp-inputs/tmp; cd /src && python /src/inference.py
          --config=/src/configs_clean/bacalhau.yml; mv /tmp-outputs/tmp/* /outputs/;
          mv /outputs/lig_equibind_corrected.sdf /outputs/7n9g_ZINC000019632618_docked.sdf;
          mv /tmp-inputs/tmp/*.pdb /outputs/;"
        EnvironmentVariables: null
        Image: ghcr.io/labdao/equibind:main@sha256:21a381d9ab1ff047565685044569c8536a55e489c9531326498b28d6b3cc244f
        Parameters: null
        WorkingDirectory: ""
      Type: docker
    Inputs:
    - CID: QmXURBWYWbphx9abyFRWotGUwXqesv5xdaAcro8aXLxHQu
      Path: /inputs
      StorageSource: ipfs
    Network:
      Type: None
    Outputs:
    - Name: outputs
      Path: /outputs
    PublisherSpec:
      Type: ipfs
    Resources:
      GPU: ""
    Timeout: 3600
    Wasm:
      EntryModule: {}
State:
  CreateTime: "2023-10-05T16:38:29.150194654Z"
  Executions:
  - ComputeReference: e-4f9dcb21-6862-4d33-9995-ae2d53b22335
    CreateTime: "2023-10-05T16:38:29.183447322Z"
    DesiredState: 2
    JobID: 891dd10b-d920-4ca7-b741-53bbd3d86afb
    NodeId: QmNmSwDk8zE6DYKyhnJrzLtgzscnXb8EreDHFsTTKV56UZ
    PublishedResults:
      CID: QmYPfPNZKUKK42hUATFDfz4Kz8GbQEgopiLNqdiHhuZ9o6
      StorageSource: ipfs
    RunOutput:
      exitCode: 0
      runnerError: ""
      stderr: |
        DGL backend not selected or invalid.  Assuming PyTorch for now.
      stderrtruncated: false
      stdout: |
        7n9g.pdb
        ZINC000019632618.sdf
        Setting the default backend to "pytorch". You can change it in the ~/.dgl/config.json file or export the DGLBACKEND environment variable.  Valid options are: pytorch, mxnet, tensorflow (all lowercase)
        [2023-10-05 16:38:43.853340] [ Using Seed :  1  ]

        Processing tmp: complex 1 of 1
        Trying to load /tmp-inputs/tmp/ZINC000019632618.sdf
        Docking the receptor /tmp-inputs/tmp/7n9g.pdb
        To the ligand /tmp-inputs/tmp/ZINC000019632618.sdf
        Writing prediction to /tmp-outputs/tmp/lig_equibind_corrected.sdf
        Saving predictions to runs/flexible_self_docking/predictions_RDKitFalse.pt
      stdouttruncated: false
    State: Completed
    Status: . execution completed
    UpdateTime: "2023-10-05T16:39:10.904681546Z"
    Version: 6
  JobID: 891dd10b-d920-4ca7-b741-53bbd3d86afb
  State: Completed
  TimeoutAt: "2023-10-05T17:38:29.150194654Z"
  UpdateTime: "2023-10-05T16:39:10.94856812Z"
  Version: 2

[linear]

LAB-662 update bacalhau job publisher to IPFS instead of Estuary

for bacalhau v1.1 upgrade

LAB-664 [LAB-662] update bacalhau job publisher to IPFS instead of Estuary

for bacalhau v1.1 upgrade

_{From SyncLinear.com | LAB-662}

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[alabdao]

Awesome!