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Table of contents

Microscope Platform user documentation.

The MicroScope platform is available at this URL: https://mage.genoscope.cns.fr/microscope.

MicroScope Platform Overview

content/overview/interface content/overview/expert content/overview/technical content/overview/login content/overview/latestnews content/overview/selection content/overview/metadata

MaGe

content/mage/viewer content/mage/info content/mage/doubloonGenes content/mage/overlapCDS content/mage/badEC content/mage/bilanAnnotationExpert content/mage/labelCPDOldNew

Genomic Tools

content/genomic/overview content/genomic/cgview content/genomic/syntenyTandem content/genomic/classifCOG content/genomic/classifEGGNOG content/genomic/minGeneSet

Comparative Genomics

content/compgenomics/genoclust content/compgenomics/phyloprofil content/compgenomics/genomicIsland content/compgenomics/panRGP content/compgenomics/linePlotForm content/compgenomics/fusfis content/compgenomics/GOstats content/compgenomics/RefSeqstats content/compgenomics/pancoreTool content/compgenomics/card content/compgenomics/virulence content/compgenomics/integron content/compgenomics/macsyfinder

Metabolism

content/metabolism/microcyc content/metabolism/kegg content/metabolism/metabolicprofil content/metabolism/pathwayCuration content/metabolism/antismash

Searches

content/search/blast content/search/keywords content/search/exportForm

Transcriptomics

content/transcriptomic/NGSProjectRNAseq content/transcriptomic/rnaseqOverview content/transcriptomic/rnaseqReadCountAnalysis content/transcriptomic/rnaseqDiffExprAnalysis content/transcriptomic/NGSOverview content/transcriptomic/NGSReadCountAnalysis content/transcriptomic/NGSDiffExprAnalysis

Variant Discovery

content/expdata/NGSProjectEvo content/expdata/sniperRes

User Panel

content/userpanel/personalinfo content/userpanel/displaypref content/userpanel/genesbasket content/userpanel/genomecarts content/userpanel/register content/userpanel/requestpassword content/userpanel/mygenomes content/userpanel/manageaccessrights