index.rst

Table of contents

Microscope Platform user documentation.

The MicroScope platform is available at this URL: https://mage.genoscope.cns.fr/microscope.

MicroScope Platform Overview

.. toctree::
   :caption: MicroScope Platform Overview
   :maxdepth: 2

   content/overview/interface
   content/overview/expert
   content/overview/technical
   content/overview/login
   content/overview/latestnews
   content/overview/selection
   content/overview/metadata

MaGe

.. toctree::
   :caption: MaGe
   :maxdepth: 2

   content/mage/viewer
   content/mage/info
   content/mage/doubloonGenes
   content/mage/overlapCDS
   content/mage/badEC
   content/mage/bilanAnnotationExpert
   content/mage/labelCPDOldNew

Genomic Tools

.. toctree::
   :caption: Genomic Tools
   :maxdepth: 2

   content/genomic/overview
   content/genomic/cgview
   content/genomic/syntenyTandem
   content/genomic/classifEGGNOG
   content/genomic/minGeneSet

Comparative Genomics

.. toctree::
   :caption: Comparative Genomics
   :maxdepth: 2

   content/compgenomics/genoclust
   content/compgenomics/phyloprofil
   content/compgenomics/genomicIsland
   content/compgenomics/panRGP
   content/compgenomics/linePlotForm
   content/compgenomics/fusfis
   content/compgenomics/GOstats
   content/compgenomics/RefSeqstats
   content/compgenomics/pancoreTool
   content/compgenomics/card
   content/compgenomics/virulence
   content/compgenomics/integron
   content/compgenomics/macsyfinder
   content/compgenomics/prophages_defense_systems

Metabolism

.. toctree::
   :caption: Metabolism
   :maxdepth: 2

   content/metabolism/microcyc
   content/metabolism/kegg
   content/metabolism/metabolicprofil
   content/metabolism/pathwayCuration
   content/metabolism/antismash

Experimental Data

.. toctree::
   :caption: Experimental Data
   :maxdepth: 2

   content/expdata/NGSProjectEvo
   content/expdata/NGSProjectRNASeq
   content/expdata/NGSOverview
   content/expdata/NGSReadCountAnalysis
   content/expdata/NGSDiffExprAnalysis
   content/expdata/NGSEvoAnalysis

Searches

.. toctree::
   :caption: Searches
   :maxdepth: 2

   content/search/blast
   content/search/keywords
   content/search/exportForm

User Panel

.. toctree::
   :caption: User Panel
   :maxdepth: 2

   content/userpanel/personalinfo
   content/userpanel/displaypref
   content/userpanel/genesbasket
   content/userpanel/genomecarts
   content/userpanel/register
   content/userpanel/requestpassword
   content/userpanel/mygenomes
   content/userpanel/manageaccessrights