HMS-LINCS Small Molecule Suite Maintenance

This repository contains scripts to process and maintain the data underlying the Small Molecule Suite project, that was developed as part of the NIH LINCS Consortium in a collaboration between Harvard Medical School's Sorger Lab and Laboratory of Systems Pharmacology (LSP) and the University of Cincinnati's Laboratory for Statistical Genomics and Systems Biology. The former (HMS) is one of the LINCS Data and Signature Generation Centers (DSGCs) and the latter (Cincinnati) is part of the BD2K-LINCS Data Coordination and Integration Center (DCIC).

Publication:

Nienke Moret, Nicholas A. Clark, Marc Hafner, Yuan Wang, Eugen Lounkine, Mario Medvedovic, Jinhua Wang, Nathanael Gray, Jeremy Jenkins, Peter K. Sorger. Cheminformatics Tools for Analyzing and Designing Optimized Small-Molecule Collections and Libraries. Cell Chem Biol (2019). doi:10.1016/j.chembiol.2019.02.018

Development and links

Design/idea by Nienke Moret and Marc Hafner (HMS - LINCS data and signature generation center)
R code by Nienke Moret and Clemens Hug (HMS - LINCS data and signature generation center)
Shiny/R web application development by Nicholas Clark (U of Cincinnati - LINCS data coordination and integration center)
Supervision by Peter Sorger (HMS - LINCS data and signature generation center)
Icon design and development by Vasileios Stathias (U of Miami - LINCS data coordination and integration center)

This work was supported by NIH grants U54-HL127365, U24-DK116204 and U54-HL127624.

BD2K-LINCS Project

HMS-LINCS Small Molecule Library
http://lincs.hms.harvard.edu/db/sm/

NIH LINCS Consortium
http://www.lincsproject.org/

HMS LINCS Center
http://lincs.hms.harvard.edu/

LINCS Data and Signature Generation Centers (DSGCs)
http://www.lincsproject.org/LINCS/centers/data-and-signature-generating-centers

BD2K-LINCS Data Coordination and Integration Center (DCIC)
http://lincs-dcic.org/

Harvard Medical School

Laboratory of Systems Pharmacology (LSP)
http://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/

Sorger Lab
http://sorger.med.harvard.edu/

University of Cincinnati

Laboratory for Statistical Genomics and Systems Biology
http://eh3.uc.edu/