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Popular repositories

  1. pnri-projects pnri-projects Public

    Projects for Dudley lab at Pacific Northwest Research Institute

    Jupyter Notebook

  2. PyPl8 PyPl8 Public

    Image analysis package for segmenting images of microbial communities and extracting quantitative features automatically.

    Python

  3. SINDy-for-coarsegraining SINDy-for-coarsegraining Public

    This repository holds the code for creating the figures in the paper "Data-driven discovery of governing equations for coarse-grained heterogeneous network dynamics"

    MATLAB

  4. SARS-CoV-2Kinetics SARS-CoV-2Kinetics Public

    This repository contains supporting files for the results reported in "Heterogeneous SARS-CoV-2 kinetics due to variable timing and intensity of immune responses"

    Jupyter Notebook