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Add references to JOSS paper #362

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Oct 28, 2022
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Add references to JOSS paper #362

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58ebecb
Add links to JOSS paper
bwohlberg Oct 28, 2022
5163fff
Clean up
bwohlberg Oct 28, 2022
695dd46
Bibtex fix
bwohlberg Oct 28, 2022
90ec6be
Address Thilo's comment
bwohlberg Oct 28, 2022
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6 changes: 5 additions & 1 deletion README.rst
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Expand Up @@ -50,14 +50,18 @@
:target: https://colab.research.google.com/github/lanl/scico-data/blob/colab/notebooks/index.ipynb
:alt: Run notebooks on google colab

.. image:: https://joss.theoj.org/papers/10.21105/joss.04722/status.svg
:target: https://doi.org/10.21105/joss.04722
:alt: JOSS paper



Scientific Computational Imaging COde (SCICO)
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I suggest changing this to Scientific Computational Imaging Code (SCICO) as in the paper

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Done.

=============================================

SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications. Its primary focus is providing methods for solving ill-posed inverse problems by using an appropriate prior model of the reconstruction space. SCICO includes a growing suite of operators, cost functionals, regularizers, and optimization routines that may be combined to solve a wide range of problems, and is designed so that it is easy to add new building blocks. SCICO is built on top of `JAX <https://github.com/google/jax>`_, which provides features such as automatic gradient calculation and GPU acceleration.

`Documentation <https://scico.rtfd.io/>`_ is available online. If you use this software for published work, please cite bibtex entry ``scico-2022`` in ``docs/source/references.bib``.
`Documentation <https://scico.rtfd.io/>`_ is available online. If you use this software for published work, please cite the corresponding `JOSS Paper <https://doi.org/10.21105/joss.04722>`_ (see bibtex entry ``balke-2022-scico`` in ``docs/source/references.bib``).


Installation
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2 changes: 1 addition & 1 deletion docs/source/overview.rst
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Expand Up @@ -48,7 +48,7 @@ and `binder
<https://mybinder.org/v2/gh/lanl/scico-data/binder?labpath=notebooks%2Findex.ipynb>`__.


If you use this library for published work, please cite :cite:`scico-2022` (see bibtex entry ``scico-2022`` in `docs/source/references.bib <https://github.com/lanl/scico/blob/main/docs/source/references.bib>`_ in the source distribution).
If you use this library for published work, please cite :cite:`balke-2022-scico` (see bibtex entry ``balke-2022-scico`` in `docs/source/references.bib <https://github.com/lanl/scico/blob/main/docs/source/references.bib>`_ in the source distribution).



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20 changes: 11 additions & 9 deletions docs/source/references.bib
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Expand Up @@ -481,15 +481,17 @@ @Article {sauer-1993-local
doi = {10.1109/78.193196}
}

@Misc {scico-2022,
author = {Thilo Balke and Fernando Davis and
Cristina Garcia-Cardona and Michael McCann and
Luke Pfister and Brendt Wohlberg},
title = {{S}cientific {C}omputational {I}maging {CO}de
{(SCICO)}},
howpublished = {Software library available from
\url{https://github.com/lanl/scico}},
year = 2022
@Article {balke-2022-scico,
author = {Thilo Balke and Fernando Davis and Cristina
Garcia-Cardona and Soumendu Majee and Michael McCann
and Luke Pfister and Brendt Wohlberg},
title = {Scientific Computational Imaging Code ({SCICO})},
journal = {Journal of Open Source Software},
year = {2022},
volume = {7},
number = {78},
pages = {4722},
doi = {10.21105/joss.04722}
}

@Article {soulez-2016-proximity,
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