Code and data for: "Hypogonadal (Gnrh1hpg) mice reveal influence of reproductive axis and sex on niche-specific intestinal microbial communities"

Folders:

1. QIIME2_commands_barcodes has the QIIME 2 commands and metadata with barcodes for running QIIME 2 on sequences at BioProject PRJNA983444

2. sourcetracker_run_data_commands has the commands,data, and mapping files used for sourcetracker, and a jupyter notebook for calculating descriptive statistics on the sourcetracker outputs

3. R_code_and_data has the R code, data tables, and mapping files used for the statistics and graphs