Parallelize StreamInterface
#64
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fredericpoitevin
approved these changes
Apr 30, 2022
scripts/tasks.py
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| @@ -90,3 +91,18 @@ def index(config): | |||
| logger.debug(f'Generating indexing executable for run {setup.run} of {setup.exp}...') | |||
| indexer_obj.write_exe() | |||
| logger.info(f'Executable written to {indexer_obj.tmp_exe}') | |||
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| def analyze_sample(config): | |||
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Maybe something more specific, like stream_analysis?
tutorial/mfxlv4920.yaml
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| @@ -39,3 +39,5 @@ index: | |||
| multi: True | |||
| profile: True | |||
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| analyze_sample: | |||
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Thanks for the suggested nomenclature! In addition to renaming |
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The
StreamInterfaceclass has been parallelized so that the input stream files (prior to merging) for a given sample (indicated by tag) are distributed across the available nodes during file reading. The contents of all the stream files are merged into the self variablestream_data, and the contents can be visualized in a peakogram or cell_explorer style plot. The latter can be generated as follows, for instance:Omitting the
--cell_onlyflag will cause the peakogram to be generated as well.A task has been added that can be run from the command line for example as follows:
$ . elog_submit.sh -c ../tutorial/mfxlv4920.yaml -t analyze_sample -n 3and the mfxlv4920.yaml has been updated accordingly.