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Fix error in hybrid view of 'Check Coregistration' when left clicking
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@ningfei
ningfei committed Jan 9, 2017
1 parent 2ed827a commit 83a58f6
Showing 1 changed file with 60 additions and 56 deletions.
116 changes: 60 additions & 56 deletions ea_imshowpair.m
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@@ -1,19 +1,19 @@
function ea_imshowpair( Img, options ,addstring,callingfunction)
% this function is based on IMSHOW3DFULL by Maysam Shahedi and supports
% truecolor images. Windowed view is adapted from MAGNIFY by Rick Hindman.
%
%
% Todd Herrington, 2016-03-16

if ~exist('callingfunction','var')
callingfunction='normalization';
callingfunction='normalization';
end
switch callingfunction
case 'ctcoregistration'
wiresIX=3:5;
gridIX=nan;
wiresIX=3:5;
gridIX=nan;
case 'normalization'
wiresIX=3;
gridIX=4;
wiresIX=3;
gridIX=4;
end

if nargin==2
Expand Down Expand Up @@ -99,7 +99,7 @@ function ea_imshowpair( Img, options ,addstring,callingfunction)
LevV =0.5;
Win = 1;
WLAdjCoe = 0.1;
end
end

ImgO = Img; % ImgO will never be permuted. ImgCr and ImgSg won't be used anymore but generated on the fly via ImgO.
%ImgCr = flip(permute(Img, [3 1 2 4]),1); % Coronal view image
Expand Down Expand Up @@ -139,10 +139,10 @@ function ea_imshowpair( Img, options ,addstring,callingfunction)
XImage=1:size(Img,1);
YImage=1:size(Img,2);

try % image toolbox
ImHndl=imshow(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
try % image toolbox
ImHndl=imshow(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
catch
ImHndl=imagesc(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
ImHndl=imagesc(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
end;
showhelptext;

Expand All @@ -169,7 +169,7 @@ function ea_imshowpair( Img, options ,addstring,callingfunction)
% stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String',sprintf('Slice# %d / %d',S, sno), 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
else
% stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String','2D image', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
end
end
%ltxthand = uicontrol('Style', 'text','Position', Ltxt_Pos,'String','Level: ', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', LFntSz);
%wtxthand = uicontrol('Style', 'text','Position', Wtxt_Pos,'String','Window: ', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', WFntSz);
%lvalhand = uicontrol('Style', 'edit','Position', Lval_Pos,'String',sprintf('%6.0f',LevV), 'BackgroundColor', [1 1 1], 'FontSize', LVFntSz,'Callback', @WinLevChanged);
Expand Down Expand Up @@ -275,12 +275,12 @@ function mouseClick (object, eventdata)
i1 = object;
a1 = get(i1,'Parent');
f1 = get(a1,'Parent');

a2 = copyobj(a1,f1, 'legacy');

i2 = get(a2,'Children');
i2=i2(2);

set(f1, ...
'UserData',[f1,a1,a2], ...
'Pointer','crosshair', ...
Expand All @@ -289,15 +289,15 @@ function mouseClick (object, eventdata)
'UserData',[1,0.1], ... %magnification, frame size
'Color',get(a1,'Color'), ...
'Box','on');
set(i2,'CData',Img(XImage,YImage,S,1+mod(MainImage,2)));
set(i2,'CData',Img(XImage,YImage,S,2));
xlabel(''); ylabel(''); zlabel(''); title('');
set(a1, ...
'Color',get(a1,'Color')*0.95);
set(f1, ...
'CurrentAxes',a1);
set(f1,'WindowButtonMotionFcn', @ButtonMotionCallback)
ButtonMotionCallback(f1);

end
end

Expand Down Expand Up @@ -347,7 +347,7 @@ function WinLevChanged(varargin)

[Rmin, Rmax] = WL2R(Win,LevV);
caxis([Rmin, Rmax])

end

% -=< Window and level to range conversion >=-
Expand All @@ -372,7 +372,7 @@ function AutoAdjust(object,eventdata)

function KeyPressCallback(object,eventdata)
H = get(gcf,'UserData');

if ~isempty(H)
f1 = H(1); a1 = H(2); a2 = H(3);
a2_param = get(a2,'UserData');
Expand All @@ -394,8 +394,8 @@ function KeyPressCallback(object,eventdata)
elseif (strcmpi(eventdata.Key,'a'))
AxialView([]);
elseif (strcmpi(eventdata.Key,'s'))
SagittalView([]);
elseif (strcmpi(eventdata.Key,'x'));
SagittalView([]);
elseif (strcmpi(eventdata.Key,'x'))
if MainImage(1)==1
MainImage=wiresIX;
elseif MainImage(1)==wiresIX(1)
Expand All @@ -404,7 +404,7 @@ function KeyPressCallback(object,eventdata)
MainImage=wiresIX;
end
set(ImHndl,'cdata',squeeze(Img(XImage,YImage,S,MainImage)));
elseif (strcmpi(eventdata.Key,'g'));
elseif (strcmpi(eventdata.Key,'g'))
if size(Img,4)==4 && strcmp(callingfunction,'normalization') % only do if grid is available.
if MainImage(1)==1
MainImage=gridIX;
Expand Down Expand Up @@ -436,48 +436,48 @@ function AxialView(object,eventdata)
S_s = S;
elseif View == 'C'
S_c = S;
end
end
View = 'A';

Img = ImgO;
S = S_a;
sno = sno_a;
cla(hdl_im);
hdl_im = axes('position',[0,0,1,1]);

if ~ImgZ
XImage=ImgZax{1};
YImage=ImgZax{2};
else
XImage=ImgZax{3};
YImage=ImgZax{4};
end




try % image toolbox
ImHndl=imshow(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);



try % image toolbox
ImHndl=imshow(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
catch
ImHndl=imagesc(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
ImHndl=imagesc(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
end;
showhelptext;


if sno > 1
% shand = uicontrol('Style', 'slider','Min',1,'Max',sno,'Value',S,'SliderStep',[1/(sno-1) 10/(sno-1)],'Position', S_Pos,'Callback', {@SliceSlider, Img});
%stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String',sprintf('Slice# %d / %d',S, sno), 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
else
%stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String','2D image', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
end

caxis([Rmin Rmax])
if sno > 1
%set(stxthand, 'String', sprintf('Slice# %d / %d',S, sno));
else
%set(stxthand, 'String', '2D image');
end

set(ImHndl,'cdata',squeeze(Img(XImage,YImage,S,MainImage)))
set (gcf, 'ButtonDownFcn', @mouseClick);
set(ImHndl,'ButtonDownFcn', @mouseClick);
Expand All @@ -489,7 +489,7 @@ function SagittalView(object,eventdata)
S_a = S;
elseif View == 'C'
S_c = S;
end
end
View = 'S';

if ~ImgZ
Expand All @@ -499,29 +499,29 @@ function SagittalView(object,eventdata)
XImage=ImgZsg{3};
YImage=ImgZsg{4};
end

Img = flip(permute(ImgO, [3 2 1 4]),1); % Sagittal view image;
S = S_s;
sno = sno_s;
cla(hdl_im);
hdl_im = axes('position',[0,0,1,1]);
try % image toolbox
ImHndl=imshow(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);

try % image toolbox
ImHndl=imshow(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
catch
ImHndl=imagesc(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
ImHndl=imagesc(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
end;
showhelptext;



if sno > 1
% shand = uicontrol('Style', 'slider','Min',1,'Max',sno,'Value',S,'SliderStep',[1/(sno-1) 10/(sno-1)],'Position', S_Pos,'Callback', {@SliceSlider, Img});
%stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String',sprintf('Slice# %d / %d',S, sno), 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
else
%stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String','2D image', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
end

caxis([Rmin Rmax])
if sno > 1
% set(stxthand, 'String', sprintf('Slice# %d / %d',S, sno));
Expand All @@ -541,37 +541,37 @@ function CoronalView(object,eventdata)
S_a = S;
elseif View == 'S'
S_s = S;
end
end
View = 'C';

if ~ImgZ
XImage=ImgZcr{1};
YImage=ImgZcr{2};
else
XImage=ImgZcr{3};
YImage=ImgZcr{4};
end

Img = flip(permute(ImgO, [3 1 2 4]),1); % Coronal view image;
S = S_c;
sno = sno_c;
cla(hdl_im);
hdl_im = axes('position',[0,0,1,1]);
try % image toolbox
ImHndl=imshow(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);

try % image toolbox
ImHndl=imshow(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
catch
ImHndl=imagesc(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
end;
ImHndl=imagesc(squeeze(Img(XImage,YImage,S,MainImage)), [Rmin Rmax]);
end;
showhelptext;

if sno > 1
% shand = uicontrol('Style', 'slider','Min',1,'Max',sno,'Value',S,'SliderStep',[1/(sno-1) 10/(sno-1)],'Position', S_Pos,'Callback', {@SliceSlider, Img});
%stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String',sprintf('Slice# %d / %d',S, sno), 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
else
%stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String','2D image', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
end

caxis([Rmin Rmax])

set(ImHndl,'cdata',squeeze(Img(XImage,YImage,S,MainImage)))
Expand Down Expand Up @@ -610,8 +610,12 @@ function CoronalView(object,eventdata)

% Rick Hindman - 4/18/01

if (nargin == 0), fig_hndl = gcf; axes_hndl = gca; end;
if (nargin == 1), axes_hndl = get(fig_hndl,'CurrentAxes'); end;
if (nargin == 0)
fig_hndl = gcf;
axes_hndl = gca;
elseif (nargin == 1)
axes_hndl = get(fig_hndl,'CurrentAxes');
end

set(fig_hndl,'Units','pixels');

Expand All @@ -628,4 +632,4 @@ function CoronalView(object,eventdata)
axes_pointer_val = sum(axes_pointer_line)/2;
end;
end
% -=< Maysam Shahedi (mshahedi@gmail.com), April 19, 2013>=-
% -=< Maysam Shahedi (mshahedi@gmail.com), April 19, 2013>=-

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