clean dependency install #23

	name: Tests (PyPI)

	on:
	push:
	branches: [main, feature_pytest_click]
	pull_request:
	branches: [main]
	workflow_dispatch:

	jobs:
	test:
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	python-version: ['3.9', '3.10', '3.11']
	os: [ macos-latest, ubuntu-latest, windows-latest ]
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install flake8 pytest pytest-cov
	python -m pip install rasterio opencv-python-headless click tqdm pyyaml
	python -m pip list
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	timeout-minutes: 5
	run: \|
	python -m pytest --cov=simple_ortho --cov-report=term-missing --cov-report=xml:coverage.xml ./tests
	- name: Upload coverage
	uses: codecov/codecov-action@v3
	with:
	fail_ci_if_error: true
	files: ./coverage.xml
	token: ${{ secrets.CODECOV_TOKEN }}

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