An example of how a static website can built with Jekyll and served on GitHub Pages
Functional annotation of FASTA sequences
A microservices implementation of the services used by the Genome Context Viewer
An InterMine containing lupin data from the LIS datastore.
Specifications for directory naming, file naming, file contents in the LIS datastore
A mine with cowpea genetic data (adding genomic in the future)
Pathlib-based downloads, caching of generated files, and a context for temp directories
Federating genomes with love (and functional annotations => synteny)
A mine containing Arachis duranensis, Arachis ipaensis, and Arachis hypogaea.
Normalize and check genomic data against Data Store standards
Webapp components common to all mines: css, js, images, model, themes
An InterMine for soybean
Simple loguru logging to file and stderr for your click application
Bespoke post-processors for LIS mines sourced from the LIS datastore.
The InterMine loaders for importing data from the LIS datastore.
Common repo for webapps/src code shared amongst all LegFed mines
Extra JARs created for the LIS mines; place under the mine root in libs.
client code for the Genome Context Viewer (GCV)
"classic" django-based implementation of the GCV service layer against a chado back-end
AraPheno source code for http://arapheno.1001genomes.org
Module to create html for the lis species page and genome page listing the resources available for a species/genome from an excel sheet.
A mine for Medicago truncatula and Medicago sativa
Tips and tricks for LIS users of imjs, the InterMine client-side query package.
Geographic map browser for LIS germplasm accession and trait evaluation data
Intuitive local web frontend for the BLAST bioinformatics tool
Tiling phylogenetic space with subtrees
A TypeScript library that provides WebComponents for viewing genes
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