Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Merge consecutive steps with identical memory, nodes, array requirement #27

Closed
lentendu opened this issue Sep 25, 2018 · 3 comments
Closed

Merge consecutive steps with identical memory, nodes, array requirement #27

lentendu opened this issue Sep 25, 2018 · 3 comments
Assignees
@lentendu
Labels
improvement pipeline master steps

Comments

@lentendu
Copy link
Owner

In GitLab by @lentendu on Jun 12, 2018, 10:19

Illumina_fastq and Illumina_pair_end
@lentendu lentendu self-assigned this Sep 25, 2018
@lentendu
Copy link
Owner Author

In GitLab by @lentendu on Sep 19, 2018, 17:46

removed milestone

@lentendu
Copy link
Owner Author

In GitLab by @lentendu on Sep 20, 2018, 09:48

This would have the side effect to reduce the number of possible checkpoints.
I need to think about it.

lentendu added a commit that referenced this issue Oct 22, 2019
@lentendu
Remove merge steps according to #27, following d55c814 of #95
1e60a68
lentendu added a commit that referenced this issue Oct 23, 2019
@lentendu
Remove merge step from pipeline master, following 1e60a68 for #27 and #…
ce11028 
…95
lentendu added a commit that referenced this issue Oct 23, 2019
@lentendu
fix header misprinting for make_count for #95 and correctly fix quali…
ab7584d 
…ty dependency for #27
lentendu added a commit that referenced this issue Oct 25, 2019
@lentendu
Remove raw_stat step, move ploting of length and quality to quality s…
e64937d 
…tep, reformat Illumina quality plotting R script #27
lentendu referenced this issue Oct 25, 2019
@lentendu
Correct raw count retrieval in Illumina quality from e64937d
b53e4b9
@lentendu
Copy link
Owner Author

Steps merge and raw_stat were removed.
Other merging would reduce the checkpointing ability, so this will not be implemented.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@lentendu lentendu

Labels
improvement pipeline master steps
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@lentendu