GitHub - lesolano/MS-Thesis: This repository houses scripts developed in support of a mRNA-seq/mass spectrometry -omics project for my MS thesis.

Name		Name	Last commit message	Last commit date
Latest commit History 62 Commits
API_GOKeywordNetworkMapper		API_GOKeywordNetworkMapper
Script 1 InChI Key and SMILES Identifiers to Pubchem CID Converter.py		Script 1 InChI Key and SMILES Identifiers to Pubchem CID Converter.py
Script 10 DGE_Volcano_Plot_Analysis.R		Script 10 DGE_Volcano_Plot_Analysis.R
Script 11 GeneratingMatchedDGEtoAverageVST		Script 11 GeneratingMatchedDGEtoAverageVST
Script 12 HeLaSpecific_PCAandkmeanscluster.R		Script 12 HeLaSpecific_PCAandkmeanscluster.R
Script 13 ZscoreScaledpheatmapsPipelinefromVST_finaldraft.R		Script 13 ZscoreScaledpheatmapsPipelinefromVST_finaldraft.R
Script 14 GO Keyword Network Mapper.py		Script 14 GO Keyword Network Mapper.py
Script 15 Gene_Set_Enrichment_Analysis.R		Script 15 Gene_Set_Enrichment_Analysis.R
Script 16 merged_topGO_v1		Script 16 merged_topGO_v1
Script 2 Boxplots.R		Script 2 Boxplots.R
Script 3 Linux_Tools_Installation		Script 3 Linux_Tools_Installation
Script 4 R_Libraries_Installed		Script 4 R_Libraries_Installed
Script 5 Read_Quality_Control		Script 5 Read_Quality_Control
Script 6 STAR_Alignment		Script 6 STAR_Alignment
Script 7 Samtools_Sort_and_Index_Alignment		Script 7 Samtools_Sort_and_Index_Alignment
Script 8 HTSeq_Feature_Counts		Script 8 HTSeq_Feature_Counts
Script 9 DESeq2_DGE_Analysis.R		Script 9 DESeq2_DGE_Analysis.R
TopGO_HeLA0RvsHeLaControl_GOBP_Template.R		TopGO_HeLA0RvsHeLaControl_GOBP_Template.R
TopGO_HeLA0RvsHeLaControl_GOCC_Template.R		TopGO_HeLA0RvsHeLaControl_GOCC_Template.R
TopGO_HeLA0RvsHeLaControl_GOMF_Template.R		TopGO_HeLA0RvsHeLaControl_GOMF_Template.R
TopGO_HeLA8RvsHeLa0R_GOBP_Template.R		TopGO_HeLA8RvsHeLa0R_GOBP_Template.R
TopGO_HeLA8RvsHeLa0R_GOCC_Template.R		TopGO_HeLA8RvsHeLa0R_GOCC_Template.R
TopGO_HeLA8RvsHeLa0R_GOMF_Template.R		TopGO_HeLA8RvsHeLa0R_GOMF_Template.R
TopGO_HeLA8RvsHeLaControl_GOBP_Template.R		TopGO_HeLA8RvsHeLaControl_GOBP_Template.R
TopGO_HeLA8RvsHeLaControl_GOCC_Template.R		TopGO_HeLA8RvsHeLaControl_GOCC_Template.R
TopGO_HeLA8RvsHeLaControl_GOMF_Template.R		TopGO_HeLA8RvsHeLaControl_GOMF_Template.R

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