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\documentclass[12pt]{beamer}
\usepackage{beamerthemeHannover, graphicx, clrscode, amsmath, amssymb, multicol}
\usepackage{verbatim}
\setbeamercolor{sidebar}{use=structure,bg=gray!60!green}
\title{Mimosa \\ \small{ Miniature Model Organism Sequence Aligner } }
\author[Leto]{Jonathan "Duke" Leto \\ Sol Genomics Network \\ http://solgenomics.net }
\date{}
\begin{document}
\frame{
\titlepage
\begin{center}
\end{center}
}
\frame{
\frametitle{What is Mimosa?}
\begin{center}
\begin{itemize}
\item Next Generation of the SGN BLAST Tool
\item Why does everyone reinvent the web alignment wheel?
\item Why are they all square-ish ?
\end{itemize}
\end{center}
}
\frame{
\frametitle{Design Goals}
\begin{center}
\begin{itemize}
\item Pluggable
\item User-Friendly
\item Interoperable
\item Easy To Deploy
\end{itemize}
\end{center}
}
\frame{
\frametitle{Pluggability}
\begin{center}
\begin{itemize}
\item Supports any database that DBI knows about
\begin{itemize}
\item SQLite
\item PostgreSQL
\item MySQL
\item ...
\end{itemize}
\item Can run standalone or through webserver
\end{itemize}
\end{center}
}
\frame{
\frametitle{User-Friendly}
\begin{center}
\begin{itemize}
\item Tooltipped context-sensitive help
\item Support different workflows for different user types
\item Download all results in various formats
\item Ability to save user preferences
\begin{itemize}
\item Preferred Organism
\item Default e-value/substitution matrix/etc
\end{itemize}
\end{itemize}
\end{center}
}
\frame{
\frametitle{Easy To Deploy}
\begin{center}
\begin{itemize}
\item What, you don't want to install 5000 CPAN modules?
\item Packages will be available for Debian/Ubuntu/etc
\item Goal: Download 1 file, Run 1 command to install
\end{itemize}
\end{center}
}
\frame{
\frametitle{Interoperable}
\begin{center}
\begin{itemize}
\item Work with current GMOD software
\item Web API to integrate with other web services
\item Possibly an Intermine Plugin?
\end{itemize}
\end{center}
}
\frame{
\frametitle{Screenshot}
\includegraphics[width=10.5cm, height=9.5cm]{mimosa_new}
}
\frame{
\frametitle{Killer Features}
\begin{itemize}
\item Web-based Sequence Set Administration
\item Sequence Set Filtering by Organism
\item Automated Sequence Set Updates (from NCBI/etc)
\item What else?
\end{itemize}
}
\frame{
\frametitle{What is under the hood?}
\begin{itemize}
\item Moose
\item BioPerl
\item Bio::Chado::Schema
\item Mason
\item jQuery
\end{itemize}
}
\frame{
\frametitle{ Resources }
\begin{center}
\begin{itemize}
\item http://github.com/GMOD/mimosa
\item http://solgenomics.net
\item \#gmod on irc.freenode.net
\end{itemize}
\end{center}
}
\frame{
\frametitle{ Thanks }
\begin{itemize}
\item Boyce Thompson Institue for Plant Research
\item NESCent
\item NSF
\end{itemize}
}
\end{document}