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Installation pre-requisites and instructions on how to use Spearmint and MongoDB

Install Xcode

xcode-select --install

Homebrew

[Homebrew page] (http://brew.sh)

Homebrew for MacOS X

Copy and paste the following in your terminal

/usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"

Linuxbrew for Ubuntu

Linuxbrew page

Copy and paste the following in your terminal

ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Linuxbrew/install/master/install)"

add brew command to your $PATH

PATH=~/.linuxbrew/bin:$PATH

Spearmint

Spearmint on GitHub

Install Spearmint and MongoDB

mkdir ~/src
cd ~/src
git clone https://github.com/HIPS/spearmint
pip install ./spearmint
brew install mongodb
pip install pymongo
pip install scipy

Run MongoDB

In one terminal

mkdir -p ~/work/spearmint
cd ~/work/spearmint
mkdir mongodb
mongod --logpath mongodb/mongod.log --dbpath mongodb

leave running

#Run Spearmint

Open a second terminal

python ~/%PATH_TO%/main.py ~/%PATH_TO_abyss.py%/
ls ~/%PATH_TO_OUTPUT%/output

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Data set, code and results from Hackseq 2016

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