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meaning of NM:i:5 AS:f:56.3 dv:f:0.0694444 id:f:0.930556 cg:Z:4=1X2=1I38=1D5=1I5=1X13=? #28

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lingliao opened this issue Nov 5, 2022 · 2 comments
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meaning of NM:i:5 AS:f:56.3 dv:f:0.0694444 id:f:0.930556 cg:Z:4=1X2=1I38=1D5=1I5=1X13=? #28

lingliao opened this issue Nov 5, 2022 · 2 comments

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@lingliao
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lingliao commented Nov 5, 2022

I am trying to figure out the aligned output file .gfa,

I learned the meaning of these columns
read 71 0 71 + >1>2>4 87 3 73 67 72 60

Please enlighten me what other columns stand for
NM:i:5 AS:f:56.3 dv:f:0.0694444 id:f:0.930556 cg:Z:4=1X2=1I38=1D5=1I5=1X13=
@lingliao
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Hello,

Could please sharing how we analysize cg:" Z:4=1X2=1I38=1D5=1I5=1X13="?

Thank you

@lh3
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lh3 commented Dec 20, 2022

See minigraph manpage.

@lh3 lh3 closed this as completed Dec 20, 2022
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