This repository contains code used for: Schnell A, Huang L, Singer M, Singaraju A, Barilla RM, Regan BML, Bollhagen A, Thakore PI, Dionne D, Delorey TM, Pawlak M, Meyer Zu Horste G, Rozenblatt-Rosen O, Irizarry RA, Regev A, Kuchroo VK. Stem-like intestinal Th17 cells give rise to pathogenic effector T cells during autoimmunity. Cell. 2021 Nov 30:S0092-8674(21)01333-7. doi: 10.1016/j.cell.2021.11.018. Epub ahead of print. PMID: 34875227.
Link to paper: https://doi.org/10.1016/j.cell.2021.11.018
Please contact linglin_huang@g.harvard.edu for questions regarding data processing and analysis.