feat: Add MatchKits script for matching and visual

src/MatchKits.php

@@ -0,0 +1,46 @@
+<?php
+
+require_once 'SNPs.php';
+require_once 'Visualization.php';
+
+class MatchKits {
+    private $kit1Data;
+    private $kit2Data;
+    private $matchedData;
+
+    public function loadKitsData($kit1Path, $kit2Path) {
+        $this->kit1Data = new Dna\Snps\SNPs($kit1Path);
+        $this->kit2Data = new Dna\Snps\SNPs($kit2Path);
+    }
+
+    public function matchKits() {
+        $this->matchedData = []; // Initialize matched data array
+        foreach ($this->kit1Data->getSnps() as $snp1) {
+            foreach ($this->kit2Data->getSnps() as $snp2) {
+                if ($snp1['pos'] == $snp2['pos'] && $snp1['genotype'] == $snp2['genotype']) {
+                    $this->matchedData[] = $snp1; // Add matching SNP to matched data
+                }
+            }
+        }
+    }
+
+    public function visualizeMatchedData() {
+        $visualization = new Visualization();
+        $visualization->plot_chromosomes($this->matchedData, "matched_data.png", "Matched SNP Data", "Build");
+    }
+}
+
+if (php_sapi_name() == "cli") {
+    $matchKits = new MatchKits();
+    echo "Enter file path for Kit 1: ";
+    $kit1Path = trim(fgets(STDIN));
+    echo "Enter file path for Kit 2: ";
+    $kit2Path = trim(fgets(STDIN));
+
+    $matchKits->loadKitsData($kit1Path, $kit2Path);
+    $matchKits->matchKits();
+    $matchKits->visualizeMatchedData();
+
+    echo "Matched data visualization has been generated.\n";
+}
+?>