ci: improvements to prepare for Cygwin support #6696
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Always checkout out shell scripts with Unix-style line endings. mingw doesn't mind, but cygwin struggles without CRLF.
Allow the build matrix to specify its shell, in case we provide one in the setup (eg, Cygwin).
Setup scripts can change BUILD_WORKSPACE, for instance, if they use a different format for paths, they can replace with `cygpath` variants.
Ensure that the main builds are all identical in nightly. Nightly should only add new, specialized builds.
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Splitting some of the more general CI improvements out of #6685 to keep it focused on Cygwin support