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Merge pull request #23 from suragnair/patch-1
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Dynseq track documentation updates
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lidaof committed Feb 24, 2021
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Expand Up @@ -291,10 +291,10 @@ Dynamic Sequence Tracks
dynseq
~~~~~~

``dynseq`` is a new track type which is proposed and initially developped by Surag Nai from Anshul Kundaje's lab at Stanford University.
Its track file is based on ``bigWig`` format, it provides importance scores for each nucleotide in the genome, so we visualize them as a string of letters with different colors (for each nucleotide) and different heights scaled by the importance scores.
``dynseq`` is a new track type which is proposed and initially developped by Surag Nair from Anshul Kundaje's lab at Stanford University.
Its track file is the same as ``bigWig`` format. It provides scores for each nucleotide in the genome, which can be derived from using importance scoring methods on machine learning models. We visualize them as a string of letters with different colors (for each nucleotide) and different heights scaled by the importance scores.

An example of loaded ``dynseq`` track is illustrated below:
An example of loaded ``dynseq`` track highlighting an E2F motif instance is illustrated below:

.. image:: _static/dynseq.png

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