image track

lidaof · Jan 29, 2022 · 3db6fda · 3db6fda
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diff --git a/docs/_static/imagetrack1.png b/docs/_static/imagetrack1.png
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diff --git a/docs/image.rst b/docs/image.rst
@@ -4,3 +4,51 @@ Image Tracks
 The browser currently supports loading image data from Omero server hosted by `4DN data portal <https://data.4dnucleome.org/>`_  and `Image Data Resource (IDR) <https://idr.openmicroscopy.org/>`_. An example interface after loading one image track is illustrated below:
 
 .. image:: _static/image_track_example.png
+
+view human image data from IDR
+------------------------------
+
+Go the browser, choose hg38:
+
+.. image:: _static/imagetrack1.png
+
+Go to Tracks, public data hubs, load the IDR image data hub:
+
+.. image:: _static/imagetrack2.png
+
+You can see the browser window is load with the image track:
+
+.. image:: _static/imagetrack3.png
+
+Click any of the image to show metadata popup:
+
+.. image:: _static/imagetrack4.png
+
+Click View larger image button to see the image in a new panel:
+
+.. image:: _static/imagetrack5.png
+
+Click ``View in Omero`` button in the new panel to see the image details in IDR website:
+
+.. image:: _static/imagetrack6.png
+
+view mouse image data from 4DN
+------------------------------
+
+Go to the browser, load mm10 genome, since the image data is sparse in mm10, we would navigate to ``chr15:83831936-84793920`` first:
+
+.. image:: _static/imagetrack7.png
+
+Go to Tracks, public data hubs, load the 4DN image data hub:
+
+.. image:: _static/imagetrack8.png
+
+You can see the image track is loaded, and you can check metadata, open image in new panel:
+
+.. image:: _static/imagetrack9.png
+
+Besides the link to Omero server is provided, there is also a button which links you to the 4DN details page:
+
+.. image:: _static/imagetrack10.png
+
+.. image:: _static/imagetrack11.png