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Matlab code for SBtab file format

SBtab is a table-based data format for Systems Biology, designed to support automated data integration and model building. It uses the structure of spreadsheets and defines conventions for table structure, controlled vocabularies and semantic annotations. The format comes with predefined table types for experimental data and SBML-compliant model structures and can easily be customized to cover new types of data.

This repository contains Matlab code for SBtab. For python code and a larger collection of example files, please see the main SBtab repository.

Dependencies

For using the functions in the subdirectory sbtab-formats, the Metabolic Network Toolbox must be installed:

https://github.com/liebermeister/metabolic-network-toolbox

Further dependencies:

o Matlab utility functions (https://github.com/liebermeister/matlab-utils)

Installation

Please see the installation instructions.

License

This package is released under the GNU General Public License.

Contact

Please contact Wolfram Liebermeister with any questions or comments.

Reference

Lubitz T., Hahn J., Bergmann F.T., Noor E., Klipp E., Liebermeister W. (2016), SBtab: A flexible table format for data exchange in systems biology. Bioinformatics 32 (16) 2559–2561

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