updates for compatibility with cml 0.19.1 (pinellolab#365)

* specify cloud-gpu
* move cml tmate debug for pipeline job above deps
* add instructions to set rclone client credentials
* use latest cml gpu image

.github/workflows/cml.yml

@@ -64,6 +64,7 @@ jobs:
               --reuse-idle \
               --cloud=gcp \
               --cloud-type=n1-highmem-96+nvidia-tesla-t4*4 \
+              --cloud-gpu=tesla \
               --cloud-hdd-size=500 \
               --cloud-region="$zone" \
               --cloud-permission-set="${GCP_SERVICE_ACCOUNT},scopes=storage-rw" \
@@ -98,14 +99,14 @@ jobs:
         with:
           path: .venv
           key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }}
+      - name: Setup tmate debug session
+        uses: mxschmitt/action-tmate@v3
+        if: ${{ inputs.model_debug_enabled }}
       - name: Install dependencies
         if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
         run: poetry install -E dev -E plotting --no-interaction --no-root
       - name: Install project
         run: poetry install -E dev -E plotting --no-interaction
-      - name: Setup tmate debug session
-        uses: mxschmitt/action-tmate@v3
-        if: ${{ inputs.model_debug_enabled }}
       - name: CML setup
         run: cml ci
       - name: Setup rclone

dockerfiles/Dockerfile

@@ -1,6 +1,6 @@
 # syntax=docker/dockerfile:1
-# FROM ghcr.io/iterative/cml:0-dvc2-base1-gpu
-FROM ghcr.io/iterative/cml@sha256:ad10a563de25311241f10d9d5509cecab6bc754b6b2c90b61e309e34fe80911e
+FROM ghcr.io/iterative/cml:0-dvc2-base1-gpu
+# FROM ghcr.io/iterative/cml@sha256:ad10a563de25311241f10d9d5509cecab6bc754b6b2c90b61e309e34fe80911e
 
 WORKDIR ${CML_RUNNER_PATH}
 COPY . pyrovelocity/

reproducibility/figures/upload_figures_drive.sh

@@ -13,12 +13,17 @@
 #
 # A shared Google Drive folder named "pyrovelocity/figures" must exist
 # and an rclone remote name pyrovelocitydrive must be configured.
+# Generate client_id and client_secret at:
+#
+#   https://rclone.org/drive/#making-your-own-client-id
+#
 # Update the values of gdrive_name and prefix_path below accordingly
 #
 #   mamba install -y rclone
 #   rclone config create "pyrovelocitydrive" drive user_acknowledge_abuse true
 #
-# The latter will redirect to the web browser to authenticate the rclone remote.
+# Use the client_id and client_secret generated above to authenticate.
+# See: https://rclone.org/drive/#configuration
 #-------------#
 
 set -euxo pipefail