fix quote issue

lilab-bcb · May 20, 2024 · 79d4e27 · 79d4e27
1 parent 822c175
commit 79d4e27
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/workflows/cellranger/cellranger_arc_count.wdl b/workflows/cellranger/cellranger_arc_count.wdl
@@ -168,7 +168,7 @@ task run_cellranger_arc_count {
         check_call(call_args)
         CODE
 
-        strato sync -m results/outs "~{output_directory}"/~{link_id}
+        strato sync -m results/outs "~{output_directory}/~{link_id}"
     }
 
     output {

diff --git a/workflows/cellranger/cellranger_count.wdl b/workflows/cellranger/cellranger_count.wdl
@@ -266,7 +266,7 @@ task run_cellranger_count {
         check_call(call_args)
         CODE
 
-        strato sync -m results/outs "~{output_directory}"/~{sample_id}
+        strato sync -m results/outs "~{output_directory}/~{sample_id}"
     }
 
     output {

diff --git a/workflows/cellranger/cellranger_multi.wdl b/workflows/cellranger/cellranger_multi.wdl
@@ -278,7 +278,7 @@ task run_cellranger_multi {
         check_call(call_args)
         CODE
 
-        strato sync -m --ionice results/outs "~{output_directory}"/~{link_id}
+        strato sync -m --ionice results/outs "~{output_directory}/~{link_id}"
     }
 
     output {