Merge pull request #101 from bbimber/master

Convert np.object to object
lilab-bcb · Feb 8, 2023 · 01f7477 · 01f7477
2 parents 7deb6ba + a178316
commit 01f7477
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/ext_modules/fast_funcs.pyx b/ext_modules/fast_funcs.pyx
@@ -11,8 +11,8 @@ ctypedef unsigned char uint8
 cpdef tuple split_barcode_channel(str[:] arr):
     cdef Py_ssize_t size = arr.size, i
 
-    barcodes = np.empty(size, dtype = np.object)
-    channels = np.empty(size, dtype = np.object)
+    barcodes = np.empty(size, dtype = object)
+    channels = np.empty(size, dtype = object)
 
     cdef str[:] bview = barcodes, cview = channels
     cdef list res

diff --git a/pegasusio/aggr_data.py b/pegasusio/aggr_data.py
@@ -136,7 +136,7 @@ def _vdj_update_metadata_matrices(self, metadata: dict, matrices: dict, unilist:
             for unidata in unilist:
                 values.update(unidata.metadata[key])
             values.discard("None") # None must be 0 for sparse matrix
-            metadata[key] = np.array(["None"] + list(values), dtype = np.object)
+            metadata[key] = np.array(["None"] + list(values), dtype = object)
             val2num = dict(zip(metadata[key], range(metadata[key].size)))
 
             mat_key = key[1:]