Merge pull request #52 from klarman-cell-observatory/yiming

Make genome and modality overwrite metadata if specified
lilab-bcb · Jan 6, 2021 · 7637a97 · 7637a97
2 parents f35d6e4 + 29241e1
commit 7637a97
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/pegasusio/unimodal_data.py b/pegasusio/unimodal_data.py
@@ -44,7 +44,13 @@ def replace_none_df(value):
         self.matrices = DataDict(matrices) # a dictionary of scipy csr matrix
         self.barcode_multiarrays = DataDict(barcode_multiarrays)
         self.feature_multiarrays = DataDict(feature_multiarrays)
+
         self.metadata = DataDict(metadata)  # other metadata, a dictionary
+        if genome is not None:
+            self.metadata.__setitem__('genome', genome)
+        if modality is not None:
+            self.metadata.__setitem__('modality', modality)
+
         self._cur_matrix = cur_matrix # cur_matrix
 
         if len(self.barcode_metadata) > 0: