3.1.6 rtol for macos azures, conda-forge

limix · Apr 17, 2019 · 3661c8e · 3661c8e
1 parent 8b09dcc
commit 3661c8e
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Showing 2 changed files with 10 additions and 10 deletions.
diff --git a/glimix_core/__init__.py b/glimix_core/__init__.py
@@ -6,7 +6,7 @@
 from . import cov, example, ggp, glmm, gp, lik, link, lmm, mean, random
 from ._testit import test
 
-__version__ = "3.1.5"
+__version__ = "3.1.6"
 
 __all__ = [
     "__version__",

diff --git a/glimix_core/lmm/test/test_lmm.py b/glimix_core/lmm/test/test_lmm.py
@@ -220,10 +220,10 @@ def fun(x):
 
     res = minimize(fun, [0] * c + [0, 0])
     lmm.fit(verbose=False)
-    assert_allclose(lmm.lml(), -res.fun, rtol=1e-4, atol=1e-6)
-    assert_allclose(lmm.beta, res.x[:c], rtol=1e-4, atol=1e-6)
-    assert_allclose(lmm.v0, exp(res.x[c]), rtol=1e-4, atol=1e-6)
-    assert_allclose(lmm.v1, exp(res.x[c + 1]), rtol=1e-4, atol=1e-6)
+    assert_allclose(lmm.lml(), -res.fun, rtol=1e-3, atol=1e-6)
+    assert_allclose(lmm.beta, res.x[:c], rtol=1e-3, atol=1e-6)
+    assert_allclose(lmm.v0, exp(res.x[c]), rtol=1e-3, atol=1e-6)
+    assert_allclose(lmm.v1, exp(res.x[c + 1]), rtol=1e-3, atol=1e-6)
 
     lmm = LMM(y, X, QS, restricted=restricted)
     beta = random.randn(c)
@@ -239,9 +239,9 @@ def fun(x):
 
     res = minimize(fun, [0, 0])
     lmm.fit(verbose=False)
-    assert_allclose(lmm.lml(), -res.fun, rtol=1e-4, atol=1e-6)
-    assert_allclose(lmm.v0, exp(res.x[0]), rtol=1e-4, atol=1e-6)
-    assert_allclose(lmm.v1, exp(res.x[1]), rtol=1e-4, atol=1e-6)
+    assert_allclose(lmm.lml(), -res.fun, rtol=1e-3, atol=1e-6)
+    assert_allclose(lmm.v0, exp(res.x[0]), rtol=1e-3, atol=1e-6)
+    assert_allclose(lmm.v1, exp(res.x[1]), rtol=1e-3, atol=1e-6)
 
     lmm = LMM(y, X, QS, restricted=restricted)
     lmm.beta = random.randn(c)
@@ -280,8 +280,8 @@ def fun(x):
     res = minimize(fun, [0] * c + [0])
     lmm.fit(verbose=False)
     assert_allclose(lmm.lml(), -res.fun, rtol=1e-5, atol=1e-6)
-    assert_allclose(lmm.beta, res.x[:c], rtol=1e-4, atol=1e-6)
-    assert_allclose(lmm.delta, 1 / (1 + exp(-res.x[c])), rtol=1e-4, atol=1e-6)
+    assert_allclose(lmm.beta, res.x[:c], rtol=1e-3, atol=1e-6)
+    assert_allclose(lmm.delta, 1 / (1 + exp(-res.x[c])), rtol=1e-3, atol=1e-6)
 
 
 def _get_mvn(y, X, G):