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recapitulate Biolink schema via KGX->LinkML schema-automator importer: handle categories #103

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sierra-moxon opened this issue Oct 10, 2022 · 0 comments
Open

recapitulate Biolink schema via KGX->LinkML schema-automator importer: handle categories #103

sierra-moxon opened this issue Oct 10, 2022 · 0 comments

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@sierra-moxon
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sierra-moxon commented Oct 10, 2022 •
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schema-automator does a pretty good job already of converting KGX nodes and edges instance files to a LinkML YAML representation of the model. But it does get a little confused in translating "category" properties of nodes/edges to an instance of a Biolink class.

schemauto generalize-tsvs --infer-foreign-keys monarch-kg_nodes.tsv monarch-kg_edges.tsv

Screen Shot 2022-10-10 at 12 45 08 PM
@sierra-moxon sierra-moxon transferred this issue from linkml/linkml Oct 10, 2022
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