Tools param (-t) breaks run_dbcan v2.0.11

[acvill]

I've found an issue with run_dbcan 2.0.11. Adding the optional -t all parameter causes the program to break. Exclusion of -t results in the correct output using the provided test files for both prok and protein inputs.

Works

run_dbcan.py EscheriaColiK12MG1655.faa protein -c EscheriaColiK12MG1655.gff --out_dir out_protein --db_dir /home/dbcan2/db
run_dbcan.py EscheriaColiK12MG1655.fna prok --out_dir out_prok --db_dir /home/dbcan2/db

Does not work

run_dbcan.py EscheriaColiK12MG1655.faa protein -c EscheriaColiK12MG1655.gff -t all --out_dir out_protein --db_dir /home/dbcan2/db
run_dbcan.py EscheriaColiK12MG1655.fna prok -t all --out_dir out_prok --db_dir /home/dbcan2/db

Originally posted by @acvill in #50 (comment)

[acvill]

More context for the observed error can be found in issue #50

#50 (comment)

[linnabrown]

Do you still have this issue in current Bioconda version?

[linnabrown]

No response