TFregulomeR-2.0.0

New features:

1. Link to data compendium hosted in Singapore and Canada;
2. Link to TF motifs and DNA methylation in human and mouse;
3. Perform TF interactome analysis coupled with DNA methylation and other chromatin signals such as chromatin accessibility.

TFregulomeR-1.2.0

1. Changed the function name TFBSBrowser to dataBrowser.
2. More detailed information about motifs, such as consistency with existing database and correlation between different motif callers, added in the output of dataBrowser.
3. Fixed some bugs in function cofactorReport.
4. Added y axis and number of peaks with motif in the output of plotLogo.

TFregulomeR-1.1.0

Compared to v1.0.0, we have made the following improvements: 1) added read enrichment for TF peaks in TFregulomeR compendium; 2) included 92 more TFBSs from MethMotif; 3) revised the function intersectPeakMatrix() to calculate read enrichment score during pair-wise comparisons; 4) designed a new function cofactorReport() to automatically generate TF cofactors along with motif sequences, DNA methylation states and read enrichment scores.

TFregulomeR-1.0.0

First stable release