Index out of range error when using HOME-pairwise

[scottgigante]

Hello,

I'm having some issues getting HOME to run.

$ HOME-pairwise -t CG -i  ../input.tsv  -o ../out -sin -npp 20
Traceback (most recent call last):
  File "/wehisan/home/allstaff/g/gigante.s/soft/lister_home/bin/HOME-pairwise", line 4, in <module>
    __import__('pkg_resources').run_script('HOME==0.4', 'HOME-pairwise')
  File "/usr/local/bioinfsoftware/python/python-2.7.11/lib/python2.7/site-packages/pkg_resources/__init__.py", line 742, in run_script
    self.require(requires)[0].run_script(script_name, ns)
  File "/usr/local/bioinfsoftware/python/python-2.7.11/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1510, in run_script
    exec(script_code, namespace, namespace)
  File "/wehisan/home/allstaff/g/gigante.s/soft/lister_home/lib/python2.7/site-packages/HOME-0.4-py2.7.egg/EGG-INFO/scripts/HOME-pairwise", line 395, in <module>

IndexError: list index out of range

My input file is as follows:

$ less ../input.tsv
alt ~/path/to/data/alt.summary.home.tsv
ref ~/path/to/data/ref.summary.home.tsv

and my data files look like this

$ head ~/path/to/data/alt.summary.home.tsv
chr5    149642973       +       CG      34      42
chr9    121883727       +       CG      3       5
chr9    24213925        +       CG      1       3
chr2    180792870       +       CG      5       8
chr1    7779688 +       CG      1       8
chr9    120952088       +       CG      1       2
chr6    97035598        +       CG      2       4
chr3    127312598       +       CG      10      14
chr3    42041023        +       CG      4       7
chr7    74422202        +       CG      5       8

The problem is the same without -sin and/or -npp. Am I doing something wrong?

Thanks!
Scott

[scottgigante]

Sorry, I worked it out. My input file was not tab-spaced. Sorry for the spam!