Shinnecock Bay eDNA study

samples collected by SCM in summer 2020
bioinformatics analysis by EAS in early 2021

Notebook DADA2_pipeline_SCM_eDNA.Rmd is cleaning up, clustering, and identifying fish species from raw Illumina reads.

Link to the hosted RMarkdown notebook for this analysis.

Notebook Ecol_analysis.Rmd is ecological analysis (abundance plots, ecological statistics, etc.).

Link to the hosted RMarkdown notebook for this analysis.

Name		Name	Last commit message	Last commit date
Latest commit History 61 Commits
Embedded_figures		Embedded_figures
stats_results		stats_results
.gitignore		.gitignore
Allometric correction_mod.xlsx		Allometric correction_mod.xlsx
DADA2_pipeline_SCM_eDNA.Rmd		DADA2_pipeline_SCM_eDNA.Rmd
DADA2_pipeline_SCM_eDNA.knit.md		DADA2_pipeline_SCM_eDNA.knit.md
DADA2_pipeline_SCM_eDNA.nb.html		DADA2_pipeline_SCM_eDNA.nb.html
DADA2_pipeline_SCM_eDNA.utf8.md		DADA2_pipeline_SCM_eDNA.utf8.md
Ecol_Analysis.Rmd		Ecol_Analysis.Rmd
Ecol_Analysis.nb.html		Ecol_Analysis.nb.html
README.md		README.md
SCM_eDNA.Rproj		SCM_eDNA.Rproj
Trawl CPUE no elasmobranch_mod.xlsx		Trawl CPUE no elasmobranch_mod.xlsx
Trawls MASTER 2020 _mod_ES.xlsx		Trawls MASTER 2020 _mod_ES.xlsx
sample_data.csv		sample_data.csv
samples		samples

lizsuter/SCM_eDNA