add pylint to env.yml #3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test | |
| on: [push, pull_request] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| test-linux: | |
| name: Test on Linux | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Use python ${{ matrix.python-version }} | |
| run: echo " - python = ${{ matrix.python-version }}" >> ./HiCMatrix_env_ci.yml | |
| - uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: ./HiCMatrix_env_ci.yml | |
| cache-downloads: true | |
| environment-name: HiCMatrix_env_ci | |
| - name: pip install | |
| run: | | |
| python3 -m pip install . | |
| shell: micromamba-shell {0} | |
| - name: Test HiCMatrix | |
| run: | | |
| py.test hicmatrix/test/ --capture=sys | |
| shell: micromamba-shell {0} | |
| test-osx: | |
| name: Test on OSX | |
| runs-on: macOS-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: ./HiCMatrix_env_ci.yml | |
| cache-downloads: true | |
| environment-name: HiCMatrix_env_ci | |
| - name: pip install | |
| run: | | |
| python3 -m pip install . | |
| shell: micromamba-shell {0} | |
| - name: Test HiCMatrix | |
| run: | | |
| py.test hicmatrix/test/ --capture=sys | |
| shell: micromamba-shell {0} |